4MVY	Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor 1-{3-[(3,5-dichlorobenzyl)amino]propyl}-3-(3-hydroxyphenyl)urea (Chem 1387)	date	2013-09-24
authors	Koh, C.Y., Kim, J.E., Wetzel, A.B., Schueren, W.J.de.van.der., Shibata, S., Liu, J., Zhang, Z., Fan, E., Verlinde, C.L.M.J., Hol, W.G.J.
compound		source
symmetry		R_factor R_Free 0.2186
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.31
ligand	387, CAS, DMS, GOL, MET	enzyme
note	4MVY supersedes 3U1E
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structures of Trypanosoma brucei Methionyl-tRNA Synthetase with Urea-Based Inhibitors Provide Guidance for Drug Design against Sleeping Sickness., Koh CY, Kim JE, Wetzel AB, de van der Schueren WJ, Shibata S, Ranade RM, Liu J, Zhang Z, Gillespie JR, Buckner FS, Verlinde CL, Fan E, Hol WG, PLoS Negl Trop Dis. 2014 Apr 17;8(4):e2775. doi: 10.1371/journal.pntd.0002775., eCollection 2014 Apr. PMID:24743796

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (365 Kb) [Save to disk] Biological Unit Coordinates (4mvy.pdb1.gz) 182 Kb Biological Unit Coordinates (4mvy.pdb2.gz) 180 Kb LPC: Ligand-Protein Contacts for 4MVY CSU: Contacts of Structural Units for 4MVY Structure Factors (1275 Kb) Retrieve 4MVY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4MVY from S2C, [Save to disk] Re-refined 4mvy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4MVY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4MVY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4MVY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4mvy_A] [4mvy] [4mvy_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4MVY

Community annotation for 4MVY at PDBWiki (http://pdbwiki.org)

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