4N21 Crystal structure of the GP2 Core Domain from the California Academy of Science Virus date 2013-10-04
authors Malashkevich, V.N., Koellhoffer, J.F., Dai, Z., Toro, R., Lai, J.R., Almo, S.C., NYSGRC, New.York.Structural.Genomics.Research.Consortium.
compound source
symmetry
R_factor
R_Free 0.2122
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.99
ligand MPD enzyme
Primary referenceStructural Characterization of the Glycoprotein GP2 Core Domain from the CAS Virus, a Novel Arenavirus-Like Species., Koellhoffer JF, Dai Z, Malashkevich VN, Stenglein MD, Liu Y, Toro R, Harrison J, Chandran K, Derisi JL, Almo SC, Lai JR, J Mol Biol. 2013 Dec 12. pii: S0022-2836(13)00751-1. doi:, 10.1016/j.jmb.2013.12.009. PMID:24333483
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (4n21.pdb1.gz) 126 Kb
  • Biological Unit Coordinates (4n21.pdb2.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 4N21
  • CSU: Contacts of Structural Units for 4N21
  • Structure Factors (933 Kb)
  • Retrieve 4N21 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4N21 from S2C, [Save to disk]
  • Re-refined 4n21 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4N21 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4N21
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4N21, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4n21] [4n21_D] [4n21_C] [4n21_A] [4n21_F] [4n21_B] [4n21_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4N21
  • Community annotation for 4N21 at PDBWiki (http://pdbwiki.org)

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