4NJ3 Modulating the interaction between CDK2 and Cyclin A with a Quinoline-based inhibitor date 2013-11-08
authors Fischmann, T.O., Hruza, A.W.
compound source
symmetry
R_factor
R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand 2KD, ACE, CSD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceModulating the interaction between CDK2 and cyclin A with a quinoline-based inhibitor., Deng Y, Shipps GW Jr, Zhao L, Siddiqui MA, Popovici-Muller J, Curran PJ, Duca JS, Hruza AW, Fischmann TO, Madison VS, Zhang R, McNemar CW, Mayhood TW, Syto R, Annis A, Kirschmeier P, Lees EM, Parry DA, Windsor WT, Bioorg Med Chem Lett. 2014 Jan 1;24(1):199-203. doi: 10.1016/j.bmcl.2013.11.041. , Epub 2013 Nov 23. PMID:24332088
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (4nj3.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4NJ3
  • CSU: Contacts of Structural Units for 4NJ3
  • Structure Factors (260 Kb)
  • Retrieve 4NJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NJ3 from S2C, [Save to disk]
  • Re-refined 4nj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NJ3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NJ3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nj3] [4nj3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NJ3: [S_TKc ] by SMART
    • Other resources with information on 4NJ3
  • Community annotation for 4NJ3 at PDBWiki (http://pdbwiki.org)

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