4NMQ CFTR Associated Ligand (CAL) PDZ domain bound to peptide iCAL36(Ac-K-4) (ANSRW[Ac-K]TSII) date
authors Amacher, J.F., Madden, D.R.
compound source
symmetry
R_factor
R_Free 0.1988
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand ALY, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceChemically Modified Peptide Scaffolds Target the CFTR-Associated Ligand PDZ Domain., Amacher JF, Zhao R, Spaller MR, Madden DR, PLoS One. 2014 Aug 19;9(8):e103650. doi: 10.1371/journal.pone.0103650., eCollection 2014. PMID:25136860
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (4nmq.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (4nmq.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 4NMQ
  • CSU: Contacts of Structural Units for 4NMQ
  • Structure Factors (300 Kb)
  • Retrieve 4NMQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NMQ from S2C, [Save to disk]
  • Re-refined 4nmq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NMQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NMQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NMQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nmq_B] [4nmq_A] [4nmq_C] [4nmq] [4nmq_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NMQ: [PDZ ] by SMART
    • Other resources with information on 4NMQ
  • Community annotation for 4NMQ at PDBWiki (http://pdbwiki.org)

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