4NQE Crystal structure of TCR-MR1 ternary complex bound to 5-(2-oxoethylideneamino)-6-D-ribitylaminouracil date
authors Birkinshaw, R.W., Rossjohn, J.
compound source
symmetry
R_factor
R_Free 0.2219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand 2L4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, B
  • cellular response to iron io...

    • Primary referenceT-cell activation by transitory neo-antigens derived from distinct microbial pathways., Corbett AJ, Eckle SB, Birkinshaw RW, Liu L, Patel O, Mahony J, Chen Z, Reantragoon R, Meehan B, Cao H, Williamson NA, Strugnell RA, Van Sinderen D, Mak JY, Fairlie DP, Kjer-Nielsen L, Rossjohn J, McCluskey J, Nature. 2014 Apr 2. doi: 10.1038/nature13160. PMID:24695216
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (277 Kb) [Save to disk]
  • Biological Unit Coordinates (4nqe.pdb1.gz) 135 Kb
  • Biological Unit Coordinates (4nqe.pdb2.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 4NQE
  • CSU: Contacts of Structural Units for 4NQE
  • Structure Factors (7138 Kb)
  • Retrieve 4NQE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NQE from S2C, [Save to disk]
  • Re-refined 4nqe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NQE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NQE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NQE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nqe_B] [4nqe_D] [4nqe_F] [4nqe_C] [4nqe_E] [4nqe_A] [4nqe] [4nqe_H] [4nqe_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4NQE: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 4NQE
  • Community annotation for 4NQE at PDBWiki (http://pdbwiki.org)

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