4NQJ Ligase date Nov 25, 2013
title Structure Of Coiled-Coil Domain
authors M.Yang, Y.Li
compound source
Molecule: E3 Ubiquitin-Protein Ligase Trim69
Chain: A, B, C
Fragment: Unp Residues 143-321
Synonym: Rfp-Like Domain-Containing Protein Trimless, Ring Protein 36, Tripartite Motif-Containing Protein 69;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trim69
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.216 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.097 101.064 233.252 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand LMT enzyme Ligase E.C.6.3.2 BRENDA
Primary referenceStructural insights into the TRIM family of ubiquitin E3 ligases., Li Y, Wu H, Wu W, Zhuo W, Liu W, Zhang Y, Cheng M, Chen YG, Gao N, Yu H, Wang L, Li W, Yang M, Cell Res. 2014 Apr 11. doi: 10.1038/cr.2014.46. PMID:24722452
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (4nqj.pdb1.gz) 380 Kb
  • LPC: Ligand-Protein Contacts for 4NQJ
  • CSU: Contacts of Structural Units for 4NQJ
  • Structure Factors (768 Kb)
  • Retrieve 4NQJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NQJ from S2C, [Save to disk]
  • Re-refined 4nqj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NQJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NQJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NQJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nqj_C] [4nqj] [4nqj_A] [4nqj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4NQJ
  • Community annotation for 4NQJ at PDBWiki (http://pdbwiki.org)

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