4NTI Crystal structure of D60N mutant of Arabidopsis ACD11 (accelerated-cell-death 11) complexed with C12 ceramide-1-phosphate (d18:1/12:0) at 2.9 Angstrom resolution date 2013-12-02
authors Simanshu, D.K., Brown, R.E., Patel, D.J.
compound source
symmetry
R_factor
R_Free 0.2273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand 1PZ, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ceramide 1-phosphate transpo...


    • Primary referenceArabidopsis Accelerated Cell Death 11, ACD11, Is a Ceramide-1-Phosphate Transfer Protein and Intermediary Regulator of Phytoceramide Levels., Simanshu DK, Zhai X, Munch D, Hofius D, Markham JE, Bielawski J, Bielawska A, Malinina L, Molotkovsky JG, Mundy JW, Patel DJ, Brown RE, Cell Rep. 2014 Jan 30;6(2):388-99. doi: 10.1016/j.celrep.2013.12.023. Epub 2014, Jan 9. PMID:24412362
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (4nti.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (4nti.pdb2.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 4NTI
  • CSU: Contacts of Structural Units for 4NTI
  • Structure Factors (173 Kb)
  • Retrieve 4NTI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NTI from S2C, [Save to disk]
  • Re-refined 4nti structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NTI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NTI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NTI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nti] [4nti_A] [4nti_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NTI
  • Community annotation for 4NTI at PDBWiki (http://pdbwiki.org)

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