4NW7 PDE4 catalytic domain date
authors III, D.Fox., Edwards, T.E.
compound source
symmetry
R_factor
R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand 2O5, EDO, MG, NA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of triazines as selective PDE4B versus PDE4D inhibitors., Hagen TJ, Mo X, Burgin AB, Fox D 3rd, Zhang Z, Gurney ME, Bioorg Med Chem Lett. 2014 Aug 15;24(16):4031-4. doi: 10.1016/j.bmcl.2014.06.002., Epub 2014 Jun 12. PMID:24998378
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (4nw7.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 4NW7
  • CSU: Contacts of Structural Units for 4NW7
  • Structure Factors (475 Kb)
  • Retrieve 4NW7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NW7 from S2C, [Save to disk]
  • Re-refined 4nw7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NW7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NW7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NW7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nw7_A] [4nw7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NW7: [HDc ] by SMART
  • Other resources with information on 4NW7
  • Community annotation for 4NW7 at PDBWiki (http://pdbwiki.org)

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