4O10 Structural and Biochemical Analyses of the Catalysis and Potency Impact of Inhibitor Phosphoribosylation by Human Nicotinamide Phosphoribosyltransferase date
authors Oh, A., Wang, W.
compound source
symmetry
R_factor
R_Free 0.1789
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.55
ligand 2QF, EDO, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and biochemical analyses of the catalysis and potency impact of inhibitor phosphoribosylation by human nicotinamide phosphoribosyltransferase., Oh A, Ho YC, Zak M, Liu Y, Chen X, Yuen PW, Zheng X, Liu Y, Dragovich PS, Wang W, Chembiochem. 2014 May 26;15(8):1121-30. doi: 10.1002/cbic.201402023. Epub 2014, May 5. PMID:24797455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (345 Kb) [Save to disk]
  • Biological Unit Coordinates (4o10.pdb1.gz) 337 Kb
  • LPC: Ligand-Protein Contacts for 4O10
  • CSU: Contacts of Structural Units for 4O10
  • Structure Factors (2567 Kb)
  • Retrieve 4O10 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O10 from S2C, [Save to disk]
  • Re-refined 4o10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4O10 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4O10
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4O10, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o10] [4o10_B] [4o10_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4O10
  • Community annotation for 4O10 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science