4OA8 X-ray crystal structure of O-methyltransferase from Anaplasma phagocytophilum in apo form date 2014-01-03
authors SSGCID, Seattle.Structural.Genomics.Center.for.Infectious.Disease.
compound source
symmetry
R_factor
R_Free 0.2318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand EDO, NA enzyme
Gene APH
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAn O-Methyltransferase Is Required for Infection of Tick Cells by Anaplasma phagocytophilum., Oliva Chavez AS, Fairman JW, Felsheim RF, Nelson CM, Herron MJ, Higgins L, Burkhardt NY, Oliver JD, Markowski TW, Kurtti TJ, Edwards TE, Munderloh UG, PLoS Pathog. 2015 Nov 6;11(11):e1005248. doi: 10.1371/journal.ppat.1005248., eCollection 2015 Nov. PMID:26544981
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (4oa8.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 4OA8
  • CSU: Contacts of Structural Units for 4OA8
  • Structure Factors (469 Kb)
  • Retrieve 4OA8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OA8 from S2C, [Save to disk]
  • Re-refined 4oa8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OA8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OA8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OA8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oa8_A] [4oa8] [4oa8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4OA8
  • Community annotation for 4OA8 at PDBWiki (http://pdbwiki.org)

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