4OO5 Crystal Structure of S-nitrosated Human Thioredoxin Mutant date 2014-01-30
authors The, J., Weichsel, A., Montfort, W.R.
compound source
symmetry
R_factor
R_Free 0.24836
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.54
ligand SNC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • thioredoxin-disulfide reduct...
  • positive regulation of pepti...

  • Primary referenceCrystal structure of human thioredoxin revealing an unraveled helix and exposed S- nitrosation site., Weichsel A, Kem M, Montfort WR, Protein Sci. 2010 Jul 26. PMID:20662007
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (4oo5.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 4OO5
  • CSU: Contacts of Structural Units for 4OO5
  • Structure Factors (242 Kb)
  • Retrieve 4OO5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OO5 from S2C, [Save to disk]
  • Re-refined 4oo5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OO5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OO5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OO5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oo5] [4oo5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4OO5
  • Community annotation for 4OO5 at PDBWiki (http://pdbwiki.org)

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