4OTI Crystal Structure of PRK1 Catalytic Domain in Complex with Tofacitinib date
authors Chamberlain, P.P., Delker, S., Pagarigan, B., Mahmoudi, A., Jackson, P., Abbassian, M., Muir, J., Raheja, N., Cathers, B.
compound source
symmetry
R_factor
R_Free 0.2259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.93
ligand MI1, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures of PRK1 in Complex with the Clinical Compounds Lestaurtinib and Tofacitinib Reveal Ligand Induced Conformational Changes., Chamberlain P, Delker S, Pagarigan B, Mahmoudi A, Jackson P, Abbasian M, Muir J, Raheja N, Cathers B, PLoS One. 2014 Aug 11;9(8):e103638. doi: 10.1371/journal.pone.0103638., eCollection 2014. PMID:25111382
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (4oti.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 4OTI
  • CSU: Contacts of Structural Units for 4OTI
  • Structure Factors (548 Kb)
  • Retrieve 4OTI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OTI from S2C, [Save to disk]
  • Re-refined 4oti structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OTI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OTI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OTI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oti] [4oti_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4OTI: [S_TK_X] [S_TKc ] by SMART
    • Other resources with information on 4OTI
  • Community annotation for 4OTI at PDBWiki (http://pdbwiki.org)

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