4P59 HER3 extracellular domain in complex with Fab fragment of MOR09825 date 2014-03-15
authors Sprague, E.R.
compound source
symmetry
R_factor
R_Free 0.2500
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.40
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAn antibody that locks HER3 in the inactive conformation inhibits tumor growth driven by HER2 or neuregulin., Garner AP, Bialucha CU, Sprague ER, Garrett JT, Sheng Q, Li S, Sineshchekova O, Saxena P, Sutton CR, Chen D, Chen Y, Wang H, Liang J, Das R, Mosher R, Gu J, Huang A, Haubst N, Zehetmeier C, Haberl M, Elis W, Kunz C, Heidt AB, Herlihy K, Murtie J, Schuller A, Arteaga CL, Sellers WR, Ettenberg SA, Cancer Res. 2013 Oct 1;73(19):6024-35. doi: 10.1158/0008-5472.CAN-13-1198. Epub, 2013 Aug 8. PMID:23928993
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (337 Kb) [Save to disk]
  • Biological Unit Coordinates (4p59.pdb1.gz) 330 Kb
  • LPC: Ligand-Protein Contacts for 4P59
  • CSU: Contacts of Structural Units for 4P59
  • Structure Factors (417 Kb)
  • Retrieve 4P59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P59 from S2C, [Save to disk]
  • Re-refined 4p59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4P59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4P59
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P59, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p59_H] [4p59] [4p59_L] [4p59_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4P59: [FU] [IG_like] [IGv ] by SMART
    • Other resources with information on 4P59
  • Community annotation for 4P59 at PDBWiki (http://pdbwiki.org)

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