4P5E	CRYSTAL STRUCTURE OF HUMAN DNPH1 (RCL) WITH 6-NAPHTHYL-PURINE-RIBOSIDE-MONOPHOSPHATE	date
authors	Padilla, A., Labesse, G., Kaminski, P.A.
compound		source
symmetry		R_factor R_Free 0.1804
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.35
ligand	CA, N6P	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	6-(Hetero)Arylpurine nucleotides as inhibitors of the oncogenic target DNPH1: Synthesis, structural studies and cytotoxic activities., Amiable C, Paoletti J, Haouz A, Padilla A, Labesse G, Kaminski PA, Pochet S, Eur J Med Chem. 2014 Aug 1;85C:418-437. doi: 10.1016/j.ejmech.2014.07.110. PMID:25108359

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk] Biological Unit Coordinates (4p5e.pdb1.gz) 111 Kb Biological Unit Coordinates (4p5e.pdb2.gz) 111 Kb LPC: Ligand-Protein Contacts for 4P5E CSU: Contacts of Structural Units for 4P5E Structure Factors (983 Kb) Retrieve 4P5E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4P5E from S2C, [Save to disk] Re-refined 4p5e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4P5E in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4P5E

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4P5E, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4p5e_A] [4p5e_B] [4p5e] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4P5E

Community annotation for 4P5E at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---