OCA Atlas for 4P5M

4P5M

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BMA, NA, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, B, D, H
G, E, A, C

Primary reference

Structural basis of chronic beryllium disease: linking allergic hypersensitivity and autoimmunity., Clayton GM, Wang Y, Crawford F, Novikov A, Wimberly BT, Kieft JS, Falta MT, Bowerman NA, Marrack P, Fontenot AP, Dai S, Kappler JW, Cell. 2014 Jul 3;158(1):132-42. doi: 10.1016/j.cell.2014.04.048. PMID:24995984

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (293 Kb) [Save to disk]

Biological Unit Coordinates (4p5m.pdb1.gz) 75 Kb

Biological Unit Coordinates (4p5m.pdb2.gz) 75 Kb

Biological Unit Coordinates (4p5m.pdb3.gz) 74 Kb

Biological Unit Coordinates (4p5m.pdb4.gz) 74 Kb

LPC: Ligand-Protein Contacts for 4P5M

CSU: Contacts of Structural Units for 4P5M

Structure Factors (4134 Kb)

Retrieve 4P5M in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4P5M from S2C, [Save to disk]

Re-refined 4p5m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4P5M in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4p5m] [4p5m_A] [4p5m_B] [4p5m_C] [4p5m_D] [4p5m_E] [4p5m_F] [4p5m_G] [4p5m_H]

SWISS-PROT database:

Domains found in 4P5M: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]