4PGR Crystal structure of YetJ from Bacillus Subtilis at pH 8 date
authors Liu, Q., Chang, Y., Hendrickson, W.A., NYCOMPS, New.York.Consortium.on.Membrane.Protein.Structure.
compound source
symmetry
R_factor
R_Free 0.2343
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for a pH-sensitive calcium leak across membranes., Chang Y, Bruni R, Kloss B, Assur Z, Kloppmann E, Rost B, Hendrickson WA, Liu Q, Science. 2014 Jun 6;344(6188):1131-5. doi: 10.1126/science.1252043. PMID:24904158
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (4pgr.pdb1.gz) 69 Kb
  • CSU: Contacts of Structural Units for 4PGR
  • Structure Factors (245 Kb)
  • Retrieve 4PGR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PGR from S2C, [Save to disk]
  • Re-refined 4pgr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PGR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PGR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PGR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pgr_A] [4pgr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4PGR
  • Community annotation for 4PGR at PDBWiki (http://pdbwiki.org)

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