4PGT	Transferase	date	Mar 22, 1999
title	Crystal Structure Of Hgstp1-1[V104] Complexed With The Gsh C Of (+)-Anti-Bpde
authors	X.Ji, J.Blaszczyk
compound		source
Molecule: Protein (Glutathione S-Transferase) Chain: A, B Synonym: Gst, Hgstp1-1[V104] Ec: 2.5.1.18 Engineered: Yes Mutation: Yes Other_details: Hgstp1-1[V104] And Hgstp1-1[I104] Are Natura Occurring Variants Of Hgstp1-1 Obtained By Site-Directed Mu		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Strain: Bl21 (De3) Plyss Organ: Placenta Cellular_location: Cytoplasm Gene: Gtp_human Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Plyss
symmetry	Space Group: C 1 2 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.090 89.840 68.780 90.00 98.13 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CSO, GBX, MES, SO4	enzyme	Transferase E.C.2.5.1.18 BRENDA
related structures	by homologous chain: 1MD3, 1PX6
Gene	GTP (H. sapiens)
Gene Ontology	Chain Function Process Component A, B glutathione peroxidase activ... protein binding
Primary reference	Structure and function of residue 104 and water molecules in the xenobiotic substrate-binding site in human glutathione S-transferase P1-1., Ji X, Blaszczyk J, Xiao B, O'Donnell R, Hu X, Herzog C, Singh SV, Zimniak P, Biochemistry 1999 Aug 10;38(32):10231-8. PMID:10441116

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (4pgt.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 4PGT CSU: Contacts of Structural Units for 4PGT Likely Quarternary Molecular Structure file(s) for 4PGT Structure Factors (244 Kb) Retrieve 4PGT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4PGT from S2C, [Save to disk] Re-refined 4pgt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PGT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4PGT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4PGT, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d4pgta2, region A:0-76 [Jmol] [rasmolscript] [script source]     - Domain d4pgta1, region A:77-209 [Jmol] [rasmolscript] [script source]     - Domain d4pgtb2, region B:1-76 [Jmol] [rasmolscript] [script source]     - Domain d4pgtb1, region B:77-209 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4pgt_B] [4pgt_A] [4pgt] SWISS-PROT database: [P09211] Domain organization of [GSTP1_HUMAN] by SWISSPFAM

Other resources with information on 4PGT

Community annotation for 4PGT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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