4PLU Crystal structure of Macrophage Migration Inhibitory Factor in complex with benzaldehyde date
authors Pantouris, G., Lolis, E.
compound source
symmetry
R_factor
R_Free 0.2136
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.63
ligand HBX, IPA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • chemoattractant activity


    • Primary referenceAn Analysis of MIF Structural Features that Control Functional Activation of CD74., Pantouris G, Syed MA, Fan C, Rajasekaran D, Cho TY, Rosenberg EM Jr, Bucala R, Bhandari V, Lolis EJ, Chem Biol. 2015 Sep 17;22(9):1197-205. doi: 10.1016/j.chembiol.2015.08.006. Epub , 2015 Sep 10. PMID:26364929
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (4plu.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 4PLU
  • CSU: Contacts of Structural Units for 4PLU
  • Structure Factors (925 Kb)
  • Retrieve 4PLU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PLU from S2C, [Save to disk]
  • Re-refined 4plu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PLU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PLU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4plu_A] [4plu_C] [4plu] [4plu_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4PLU
  • Community annotation for 4PLU at PDBWiki (http://pdbwiki.org)

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