4POJ	Transcription	date	Feb 25, 2014
title	Crystal Structure Of Human Retinoid X Receptor Alpha-Ligand Domain Complex With 7-Methyl Uab30 And The Coactivator Pept
authors	G.Xia, C.D.Smith, D.D.Muccio
compound		source
Molecule: Retinoic Acid Receptor Rxr-Alpha Chain: A Fragment: Ligand Binding Domain, Unp Residues 228-458 Synonym: Nuclear Receptor Subfamily 2 Group B Member 1, Ret Receptor Alpha; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Strain: P19793 Gene: Nr2b1, Rxra, Rxra Nr2b1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_vector_type: Bl21(De3)
Molecule: Nuclear Receptor Coactivator 2 Chain: B Fragment: Coactivator Peptide, Unp Residues 686-698 Synonym: Ncoa-2, Class E Basic Helix-Loop-Helix Protein 75, Transcriptional Intermediary Factor 2, Htif2; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 43 21 2	R_factor 0.218 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.880 65.880 112.010 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	2VP	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Methyl Substitution of a Rexinoid Agonist Improves Potency and Reveals Site of Lipid Toxicity., Atigadda VR, Xia G, Desphande A, Boerma LJ, Lobo-Ruppert S, Grubbs CJ, Smith CD, Brouillette WJ, Muccio DD, J Med Chem. 2014 Jun 5. PMID:24801499

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (4poj.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 4POJ CSU: Contacts of Structural Units for 4POJ Structure Factors (506 Kb) Retrieve 4POJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4POJ from S2C, [Save to disk] Re-refined 4poj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4POJ in 3D

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Visual 3D analysis of 4POJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4POJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4poj_B] [4poj] [4poj_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4POJ: [HOLI ] by SMART

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