4PVU	Transcription	date	Mar 18, 2014
title	Crystal Structure Of The Complex Between Ppargamma-Lbd And T Enantiomer Of Mbx-102 (Metaglidasen)
authors	G.Pochetti, R.Montanari, D.Capelli, F.Loiodice, A.Laghezza, L.Pie A.Lavecchia
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain, Unp Residues 223-505 Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 1 2 1	R_factor 0.200 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.370 60.210 119.060 90.00 103.39 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	MGZ	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	On the Metabolically Active Form of Metaglidasen: Improved Synthesis and Investigation of Its Peculiar Activity on Peroxisome Proliferator-Activated Receptors and Skeletal Muscles., Laghezza A, Montanari R, Lavecchia A, Piemontese L, Pochetti G, Iacobazzi V, Infantino V, Capelli D, De Bellis M, Liantonio A, Pierno S, Tortorella P, Conte Camerino D, Loiodice F, ChemMedChem. 2015 Jan 29. doi: 10.1002/cmdc.201402462. PMID:25641779

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk] Biological Unit Coordinates (4pvu.pdb1.gz) 172 Kb LPC: Ligand-Protein Contacts for 4PVU CSU: Contacts of Structural Units for 4PVU Structure Factors (379 Kb) Retrieve 4PVU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4PVU from S2C, [Save to disk] Re-refined 4pvu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PVU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4PVU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4PVU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4pvu_B] [4pvu] [4pvu_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4PVU: [HOLI ] by SMART

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