4Q2P NHERF3 PDZ2 in Complex with a Phage-Derived Peptide date
authors Appleton, B.A., Wiesmann, C.
compound source
symmetry
R_factor
R_Free 0.2516
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.05
ligand EDO, TRS enzyme
Primary referenceA Structural Portrait of the PDZ Domain Family., Ernst A, Appleton BA, Ivarsson Y, Zhang Y, Gfeller D, Wiesmann C, Sidhu SS, J Mol Biol. 2014 Aug 23. pii: S0022-2836(14)00431-8. doi:, 10.1016/j.jmb.2014.08.012. PMID:25158098
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (4q2p.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 4Q2P
  • CSU: Contacts of Structural Units for 4Q2P
  • Structure Factors (141 Kb)
  • Retrieve 4Q2P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Q2P from S2C, [Save to disk]
  • Re-refined 4q2p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Q2P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Q2P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Q2P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q2p_B] [4q2p_C] [4q2p] [4q2p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Q2P: [PDZ ] by SMART
    • Other resources with information on 4Q2P
  • Community annotation for 4Q2P at PDBWiki (http://pdbwiki.org)

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