4QGW Crystal sturcture of the R132K:R111L:L121D mutant of Cellular Retinoic Acid Binding ProteinII complexed with a synthetic ligand (Merocyanine) at 1.77 angstrom resolution date
authors Nosrati, M., Yapici, I., Geiger, J.H.
compound source
symmetry
R_factor
R_Free 0.2431
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.77
ligand B3P, LMC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary reference"Turn-On" Protein Fluorescence: In Situ Formation of Cyanine Dyes., Yapici I, Lee KS, Berbasova T, Nosrati M, Jia X, Vasileiou C, Wang W, Santos EM, Geiger JH, Borhan B, J Am Chem Soc. 2015 Jan 14. PMID:25534273
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (4qgw.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (4qgw.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 4QGW
  • CSU: Contacts of Structural Units for 4QGW
  • Structure Factors (459 Kb)
  • Retrieve 4QGW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QGW from S2C, [Save to disk]
  • Re-refined 4qgw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QGW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QGW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QGW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qgw] [4qgw_A] [4qgw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4QGW
  • Community annotation for 4QGW at PDBWiki (http://pdbwiki.org)

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