4QK8 Thermoanaerobacter pseudethanolicus c-di-AMP riboswitch date
authors Gao, A., Serganov, A.
compound source
symmetry
R_factor
R_Free 0.1949
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.05
ligand 23G, 2BA, GTP, K, MG, SO4 enzyme
Primary referenceStructural insights into recognition of c-di-AMP by the ydaO riboswitch., Gao A, Serganov A, Nat Chem Biol. 2014 Sep;10(9):787-92. doi: 10.1038/nchembio.1607. Epub 2014 Aug, 3. PMID:25086507
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (4qk8.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 4QK8
  • CSU: Contacts of Structural Units for 4QK8
  • Structure Factors (265 Kb)
  • Retrieve 4QK8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QK8 from S2C, [Save to disk]
  • Re-refined 4qk8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QK8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QK8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QK8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qk8] [4qk8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4QK8
  • Community annotation for 4QK8 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science