4QXX Structure of the amyloid forming peptide GNLVS (residues 26-30) from the eosinophil major basic protein (EMBP) date
authors Soriaga, A.B., Soragni, A., Sawaya, M.R., Eisenberg, D.
compound source
symmetry
R_factor
R_Free 0.1918
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.45
Primary referenceToxicity of Eosinophil MBP Is Repressed by Intracellular Crystallization and Promoted by Extracellular Aggregation., Soragni A, Yousefi S, Stoeckle C, Soriaga AB, Sawaya MR, Kozlowski E, Schmid I, Radonjic-Hoesli S, Boutet S, Williams GJ, Messerschmidt M, Seibert MM, Cascio D, Zatsepin NA, Burghammer M, Riekel C, Colletier JP, Riek R, Eisenberg DS, Simon HU, Mol Cell. 2015 Feb 25. pii: S1097-2765(15)00049-0. doi:, 10.1016/j.molcel.2015.01.026. PMID:25728769
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (5 Kb) [Save to disk]
  • Biological Unit Coordinates (4qxx.pdb1.gz) 3 Kb
  • CSU: Contacts of Structural Units for 4QXX
  • Structure Factors (11 Kb)
  • Retrieve 4QXX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QXX from S2C, [Save to disk]
  • Re-refined 4qxx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QXX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QXX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QXX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qxx_Z] [4qxx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4QXX
  • Community annotation for 4QXX at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science