4RAV Crystal structure of scFvC4 in complex with the first 17 AA of huntingtin date
authors Genst, E.De., Chirgadze, D.Y., Dobson, C.M.
compound source
symmetry
R_factor
R_Free 0.2263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand SO4 enzyme
Primary referenceStructure of a single-chain Fv bound to the 17 N-terminal residues of huntingtin provides insights into pathogenic amyloid formation and suppression., De Genst E, Chirgadze DY, Klein FA, Butler DC, Matak-Vinkovic D, Trottier Y, Huston JS, Messer A, Dobson CM, J Mol Biol. 2015 Jun 19;427(12):2166-78. doi: 10.1016/j.jmb.2015.03.021. Epub, 2015 Apr 8. PMID:25861763
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (4rav.pdb1.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 4RAV
  • CSU: Contacts of Structural Units for 4RAV
  • Structure Factors (177 Kb)
  • Retrieve 4RAV in mmCIF format [Save to disk]
  • Re-refined 4rav structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RAV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RAV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rav_E] [4rav] [4rav_D] [4rav_C] [4rav_A] [4rav_B] [4rav_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RAV: [IGv ] by SMART
    • Other resources with information on 4RAV
  • Community annotation for 4RAV at PDBWiki (http://pdbwiki.org)

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