4RFY Crystal structure of BTK kinase domain complexed with 6-(dimethylamino)-2-[2-(hydroxymethyl)-3-[1-methyl-5-[[5-(morpholine-4-carbonyl)-2-pyridyl]amino]-6-oxo-3-pyridyl]phenyl]-3,4-dihydroisoquinolin-1-one date
authors Kuglstatter, A., Wong, A.
compound source
symmetry
R_factor
R_Free 0.21882
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand 3OU, DMS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFinding the perfect spot for fluorine: Improving potency up to 40-fold during a rational fluorine scan of a Bruton's Tyrosine Kinase (BTK) inhibitor scaffold., Lou Y, Sweeney ZK, Kuglstatter A, Davis D, Goldstein DM, Han X, Hong J, Kocer B, Kondru RK, Litman R, McIntosh J, Sarma K, Suh J, Taygerly J, Owens TD, Bioorg Med Chem Lett. 2014 Nov 20. pii: S0960-894X(14)01214-1. doi:, 10.1016/j.bmcl.2014.11.030. PMID:25466710
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (4rfy.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 4RFY
  • CSU: Contacts of Structural Units for 4RFY
  • Structure Factors (590 Kb)
  • Retrieve 4RFY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RFY from S2C, [Save to disk]
  • Re-refined 4rfy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RFY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RFY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RFY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rfy_A] [4rfy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RFY: [TyrKc ] by SMART
    • Other resources with information on 4RFY
  • Community annotation for 4RFY at PDBWiki (http://pdbwiki.org)

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