4RIM Native structure of intercalation-locked DNA tetraplex date
authors Tripathi, S.K., Zhang, D., Paukstelis, P.
compound source
symmetry
R_factor
R_Free 0.30173
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
Primary referenceAn intercalation-locked parallel-stranded DNA tetraplex., Tripathi S, Zhang D, Paukstelis PJ, Nucleic Acids Res. 2015 Jan 27. pii: gkv033. PMID:25628357
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (4rim.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 4RIM
  • Structure Factors (145 Kb)
  • Retrieve 4RIM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RIM from S2C, [Save to disk]
  • Re-refined 4rim structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RIM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RIM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RIM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rim_A] [4rim]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RIM
  • Community annotation for 4RIM at PDBWiki (http://pdbwiki.org)

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