4RLM Hen egg-white lysozyme solved from serial crystallography at a synchrotron source, data processed with CrystFEL date
authors Botha, S., Nass, K., Barends, T., Kabsch, W., Latz, B., Dworkowski, F., Foucar, L., Panepucci, E., Wang, M., Shoeman, R., Schlichting, I., Doak, R.B.
compound source
symmetry
R_factor
R_Free 0.24276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRoom-temperature serial crystallography at synchrotron X-ray sources using slowly flowing free-standing high-viscosity microstreams., Botha S, Nass K, Barends TR, Kabsch W, Latz B, Dworkowski F, Foucar L, Panepucci E, Wang M, Shoeman RL, Schlichting I, Doak RB, Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):387-97. doi:, 10.1107/S1399004714026327. Epub 2015 Jan 23. PMID:25664750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (4rlm.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 4RLM
  • Structure Factors (145 Kb)
  • Retrieve 4RLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RLM from S2C, [Save to disk]
  • Re-refined 4rlm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RLM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RLM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rlm_A] [4rlm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RLM: [LYZ1 ] by SMART
  • Other resources with information on 4RLM
  • Community annotation for 4RLM at PDBWiki (http://pdbwiki.org)

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