4RMN Crystal structure of a benzoate coenzyme A ligase with 2-Thiophene Carboxylic acid date
authors Strom, S., Nosrati, M., Thornburg, C., Walker, K.D., Geiger, J.H.
compound source
symmetry
R_factor
R_Free 0.19366
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.72
ligand C21, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceKinetic- and Crystallographic-Guided Mutations of a Benzoate CoA Ligase (BadA) Elucidate Mechanism and Expand Substrate Permissivity., Thornburg CK, Wortas-Strom S, Nosrati M, Geiger JH, Walker KD, Biochemistry. 2015 Oct 1. PMID:26378464
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (4rmn.pdb1.gz) 170 Kb
  • Biological Unit Coordinates (4rmn.pdb2.gz) 86 Kb
  • Biological Unit Coordinates (4rmn.pdb3.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 4RMN
  • CSU: Contacts of Structural Units for 4RMN
  • Structure Factors (1958 Kb)
  • Retrieve 4RMN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RMN from S2C, [Save to disk]
  • Re-refined 4rmn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RMN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RMN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rmn_A] [4rmn] [4rmn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RMN
  • Community annotation for 4RMN at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science