4RNE Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions date
authors Fyfe, A.C., Dunten, P.W., Scott, W.G.
compound source
symmetry
R_factor
R_Free 0.11916
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.01
ligand CA, NA, SR enzyme
Primary referenceStructural Variations and Solvent Structure of r(UGGGGU) Quadruplexes Stabilized by Sr(2+) Ions., Fyfe AC, Dunten PW, Martick MM, Scott WG, J Mol Biol. 2015 Jun 19;427(12):2205-19. doi: 10.1016/j.jmb.2015.03.022. Epub, 2015 Apr 8. PMID:25861762
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (4rne.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (4rne.pdb2.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 4RNE
  • CSU: Contacts of Structural Units for 4RNE
  • Structure Factors (940 Kb)
  • Retrieve 4RNE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RNE from S2C, [Save to disk]
  • Re-refined 4rne structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RNE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RNE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RNE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rne_F] [4rne_E] [4rne_H] [4rne_G] [4rne_C] [4rne_B] [4rne_A] [4rne_D] [4rne]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RNE
  • Community annotation for 4RNE at PDBWiki (http://pdbwiki.org)

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