4S0S STRUCTURE OF HUMAN PREGNANE X RECEPTOR LIGAND BINDING DOMAIN with ADNECTIN-1 date
authors Khan, J.A.
compound source
symmetry
R_factor
R_Free 0.2292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDeveloping Adnectins That Target SRC Co-Activator Binding to PXR: A Structural Approach toward Understanding Promiscuity of PXR., Khan JA, Camac DM, Low S, Tebben AJ, Wensel DL, Wright MC, Su J, Jenny V, Gupta RD, Ruzanov M, Russo KA, Bell A, An Y, Bryson JW, Gao M, Gambhire P, Baldwin ET, Gardner D, Cavallaro CL, Duncia JV, Hynes J Jr, J Mol Biol. 2015 Jan 8. pii: S0022-2836(15)00002-9. doi:, 10.1016/j.jmb.2014.12.022. PMID:25579995
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (4s0s.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (4s0s.pdb2.gz) 58 Kb
  • CSU: Contacts of Structural Units for 4S0S
  • Structure Factors (1625 Kb)
  • Retrieve 4S0S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4S0S from S2C, [Save to disk]
  • Re-refined 4s0s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4S0S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4S0S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4S0S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4s0s_A] [4s0s] [4s0s_B] [4s0s_E] [4s0s_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4S0S: [FN3] [HOLI ] by SMART
    • Other resources with information on 4S0S
  • Community annotation for 4S0S at PDBWiki (http://pdbwiki.org)

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