4TLN BINDING OF HYDROXAMIC ACID INHIBITORS TO CRYSTALLINE THERMOLYSIN SUGGESTS A PENTACOORDINATE ZINC INTERMEDIATE IN CATALYSIS date
authors Matthews, B.W., Holmes, M.A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand CA, LNO, ZN enzyme
related structures by homologous chain: 7TLN, 8TLI
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBinding of hydroxamic acid inhibitors to crystalline thermolysin suggests a pentacoordinate zinc intermediate in catalysis., Holmes MA, Matthews BW, Biochemistry 1981 Nov 24;20(24):6912-20. PMID:7317361
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (4tln.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 4TLN
  • CSU: Contacts of Structural Units for 4TLN
  • Likely Quarternary Molecular Structure file(s) for 4TLN
  • Structure Factors (60 Kb)
  • Retrieve 4TLN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TLN from S2C, [Save to disk]
  • Re-refined 4tln structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4TLN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4TLN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TLN, from MSDmotif at EBI
  • Genome occurence of 4TLN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d4tln__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tln] [4tln_A]
  • SWISS-PROT database: [P00800]
  • Domain organization of [THER_BACTH] by SWISSPFAM
  • Other resources with information on 4TLN
  • Community annotation for 4TLN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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