OCA Atlas for 4TNV

4TNV

C. elegans glutamate-gated chloride channel (GluCl) in complex with Fab in a non-conducting conformation

date

authors

Althoff, T., Hibbs, R.E., Banerjee, S., Gouaux, E.

compound

source

symmetry

R_factor

R_Free

0.2829

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

3.60

ligand

CL, FLC, LMT, NAG

enzyme

note

4TNV (Molecule of the Month:pdb191)

Gene

CELE

Gene
Ontology

Chain	Function	Process	Component
S, A, T, P, E, B, Q, C, D, R

Primary reference

X-ray structures of GluCl in apo states reveal a gating mechanism of Cys-loop receptors., Althoff T, Hibbs RE, Banerjee S, Gouaux E, Nature. 2014 Aug 21;512(7514):333-7. doi: 10.1038/nature13669. PMID:25143115

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2551 Kb) [Save to disk]

Biological Unit Coordinates (4tnv.pdb1.gz) 1277 Kb

Biological Unit Coordinates (4tnv.pdb2.gz) 1274 Kb

LPC: Ligand-Protein Contacts for 4TNV

CSU: Contacts of Structural Units for 4TNV

Structure Factors (1488 Kb)

Retrieve 4TNV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4TNV from S2C, [Save to disk]

Re-refined 4tnv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4TNV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4TNV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 4TNV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4tnv_D] [4tnv_A] [4tnv_U] [4tnv_F] [4tnv_N] [4tnv_g] [4tnv_C] [4tnv_S] [4tnv_h] [4tnv_R] [4tnv_K] [4tnv_W] [4tnv_Y] [4tnv_B] [4tnv_I] [4tnv_i] [4tnv_Q] [4tnv_H] [4tnv_V] [4tnv_L] [4tnv] [4tnv_P] [4tnv_E] [4tnv_T] [4tnv_G] [4tnv_Z] [4tnv_O] [4tnv_J] [4tnv_X] [4tnv_M] [4tnv_f]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domains found in 4TNV: [IG_like] [IGv ] by SMART

Other resources with information on 4TNV

Community annotation for 4TNV at PDBWiki (http://pdbwiki.org)

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