4TU4 Crystal structure of ATAD2A bromodomain complexed with 3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-[(phenylsulfonyl)amino]benzoicacid date
authors Poncet-Montange, G., Zhan, Y., Bardenhagen, J., Petrocchi, A., Leo, E., Shi, X., Lee, G., Leonard, P., Do, M.Geck., Cardozo, M., Palmer, W., Andersen, J., Jones, P., Ladbury, J.
compound source
symmetry
R_factor
R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.73
ligand 37N, CL, DMS, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceObserved bromodomain flexibility reveals histone peptide- and small molecule ligand-compatible forms of ATAD2A., Poncet-Montange G, Zhan Y, Bardenhagen JP, Petrocchi A, Leo E, Shi X, Lee Iv GR, Leonard PG, Geck Do MK, Cardozo MG, Andersen JN, Palmer WS, Jones P, Ladbury JE, Biochem J. 2014 Dec 8. PMID:25486442
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (4tu4.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 4TU4
  • CSU: Contacts of Structural Units for 4TU4
  • Structure Factors (490 Kb)
  • Retrieve 4TU4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TU4 from S2C, [Save to disk]
  • Re-refined 4tu4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TU4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TU4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TU4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tu4] [4tu4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4TU4: [BROMO ] by SMART
    • Other resources with information on 4TU4
  • Community annotation for 4TU4 at PDBWiki (http://pdbwiki.org)

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