4UDC GR in complex with dexamethasone date
authors Edman, K., Hogner, A., Hussein, A., Bjursell, M., Aagaard, A., Backstrom, S., Bodin, C., Wissler, L., Jellesmark-Jensen, T., Cavallin, A., Karlsson, U., Nilsson, E., Lecina, D., Takahashi, R., Grebner, C., Lepisto, M., Guallar, V.
compound source
symmetry
R_factor
R_Free 0.2528
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand CPS, DEX enzyme
Primary referenceLigand Binding Mechanism in Steroid Receptors: From Conserved Plasticity to Differential Evolutionary Constraints., Edman K, Hosseini A, Bjursell MK, Aagaard A, Wissler L, Gunnarsson A, Kaminski T, Kohler C, Backstrom S, Jensen TJ, Cavallin A, Karlsson U, Nilsson E, Lecina D, Takahashi R, Grebner C, Geschwindner S, Lepisto M, Hogner AC, Guallar V, Structure. 2015 Dec 1;23(12):2280-90. doi: 10.1016/j.str.2015.09.012. Epub 2015, Oct 22. PMID:26602186
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (4udc.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 4UDC
  • CSU: Contacts of Structural Units for 4UDC
  • Structure Factors (280 Kb)
  • Retrieve 4UDC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UDC from S2C, [Save to disk]
  • Re-refined 4udc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UDC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UDC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4udc_B] [4udc_A] [4udc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UDC: [HOLI ] by SMART
    • Other resources with information on 4UDC
  • Community annotation for 4UDC at PDBWiki (http://pdbwiki.org)

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