4UMD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CIT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • 3-deoxy-manno-octulosonate-8...


  • Primary referenceLigand-bound structures of 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase from Moraxella catarrhalis reveal a water channel connecting to the active site for the second step of catalysis., Dhindwal S, Priyadarshini P, Patil DN, Tapas S, Kumar P, Tomar S, Kumar P, Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):239-55. doi:, 10.1107/S1399004714025218. Epub 2015 Jan 23. PMID:25664734
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (4umd.pdb1.gz) 214 Kb
  • LPC: Ligand-Protein Contacts for 4UMD
  • CSU: Contacts of Structural Units for 4UMD
  • Structure Factors (157 Kb)
  • Retrieve 4UMD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UMD from S2C, [Save to disk]
  • Re-refined 4umd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UMD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4umd] [4umd_A]
  • SWISS-PROT database:

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