4UYD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand DMS, EDO, V1T enzyme
Primary reference1,3-Dimethyl Benzimidazolones Are Potent, Selective Inhibitors of the BRPF1 Bromodomain., Demont EH, Bamborough P, Chung CW, Craggs PD, Fallon D, Gordon LJ, Grandi P, Hobbs CI, Hussain J, Jones EJ, Le Gall A, Michon AM, Mitchell DJ, Prinjha RK, Roberts AD, Sheppard RJ, Watson RJ, ACS Med Chem Lett. 2014 Sep 10;5(11):1190-1195. eCollection 2014 Nov 13. PMID:25408830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (4uyd.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 4UYD
  • CSU: Contacts of Structural Units for 4UYD
  • Structure Factors (505 Kb)
  • Retrieve 4UYD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UYD from S2C, [Save to disk]
  • Re-refined 4uyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UYD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4UYD, from MSDmotif at EBI
  • Fold representative 4uyd from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uyd] [4uyd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UYD: [BROMO ] by SMART
    • Other resources with information on 4UYD
  • Community annotation for 4UYD at PDBWiki (http://pdbwiki.org)

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