4V1F Crystal structure of a mycobacterial ATP synthase rotor ring in complex with Bedaquiline date
authors Preiss, L., Yildiz, O., Meier, T.
compound source
symmetry
R_factor
R_Free 0.1619
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand BOG, BQ1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure of the mycobacterial ATP synthase F rotor ring in complex with the anti-TB drug bedaquiline., Preiss L, Langer JD, Yildiz O, Eckhardt-Strelau L, Guillemont JE, Koul A, Meier T, Sci Adv. 2015 May 8;1(4):e1500106. eCollection 2015 May. PMID:26601184
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (4v1f.pdb1.gz) 250 Kb
  • LPC: Ligand-Protein Contacts for 4V1F
  • CSU: Contacts of Structural Units for 4V1F
  • Structure Factors (417 Kb)
  • Retrieve 4V1F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V1F from S2C, [Save to disk]
  • Re-refined 4v1f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4V1F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V1F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4V1F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v1f_B] [4v1f_C] [4v1f_A] [4v1f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4V1F
  • Community annotation for 4V1F at PDBWiki (http://pdbwiki.org)

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