4V3K	RNF38-UbcH5B-UB complex	date
authors	Buetow, L., Gabrielsen, M., Anthony, N.G., Dou, H., Patel, A., Aitkenhead, H., Sibbet, G.J., Smith, B.O., Huang, D.T.
compound		source
symmetry		R_factor R_Free 0.2234
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.04
ligand	CL, EDO, ZN	enzyme
Gene Ontology	Chain Function Process Component A, D
Primary reference	Activation of a Primed RING E3-E2-Ubiquitin Complex by Non-Covalent Ubiquitin., Buetow L, Gabrielsen M, Anthony NG, Dou H, Patel A, Aitkenhead H, Sibbet GJ, Smith BO, Huang DT, Mol Cell. 2015 Mar 18. pii: S1097-2765(15)00131-8. doi:, 10.1016/j.molcel.2015.02.017. PMID:25801170

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk] Biological Unit Coordinates (4v3k.pdb1.gz) 52 Kb Biological Unit Coordinates (4v3k.pdb2.gz) 53 Kb LPC: Ligand-Protein Contacts for 4V3K CSU: Contacts of Structural Units for 4V3K Structure Factors (2399 Kb) Retrieve 4V3K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4V3K from S2C, [Save to disk] Re-refined 4v3k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4V3K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4V3K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4V3K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4v3k_A] [4v3k] [4v3k_B] [4v3k_E] [4v3k_D] [4v3k_F] [4v3k_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4V3K: [RING] [UBCc] [UBQ ] by SMART

Other resources with information on 4V3K

Community annotation for 4V3K at PDBWiki (http://pdbwiki.org)

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