4W56 T4 Lysozyme L99A with sec-Butylbenzene Bound date
authors Merski, M., Shoichet, B.K., Eidam, O., Fischer, M.
compound source
symmetry
R_factor
R_Free 0.1877
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.63
ligand 3GY, EPE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHomologous ligands accommodated by discrete conformations of a buried cavity., Merski M, Fischer M, Balius TE, Eidam O, Shoichet BK, Proc Natl Acad Sci U S A. 2015 Apr 6. pii: 201500806. PMID:25847998
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (4w56.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 4W56
  • CSU: Contacts of Structural Units for 4W56
  • Structure Factors (224 Kb)
  • Retrieve 4W56 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4W56 from S2C, [Save to disk]
  • Re-refined 4w56 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4W56 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4W56
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4W56, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4w56_A] [4w56]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4W56
  • Community annotation for 4W56 at PDBWiki (http://pdbwiki.org)

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