4WFS Crystal Structure of tRNA-dihydrouridine(20) synthase catalytic domain date
authors Nader, C.Bou., Pecqueur, L., Kamah, A., Bregeon, D., Golinelli-Pimpaneau, B., Guimaraes, B.G., Fontecave, M., Hamdane, D.
compound source
symmetry
R_factor
R_Free 0.2217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.68
ligand CL, FMN, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAn extended dsRBD is required for post-transcriptional modification in human tRNAs., Bou-Nader C, Pecqueur L, Bregeon D, Kamah A, Guerineau V, Golinelli-Pimpaneau B, Guimaraes BG, Fontecave M, Hamdane D, Nucleic Acids Res. 2015 Oct 1. pii: gkv989. PMID:26429968
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (4wfs.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 4WFS
  • CSU: Contacts of Structural Units for 4WFS
  • Structure Factors (107 Kb)
  • Retrieve 4WFS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WFS from S2C, [Save to disk]
  • Re-refined 4wfs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WFS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WFS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wfs_A] [4wfs]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4WFS
  • Community annotation for 4WFS at PDBWiki (http://pdbwiki.org)

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