4WNM SYK catalytic domain in complex with a potent triazolopyridine inhibitor date
authors Jackson, P.J.
compound source
symmetry
R_factor
R_Free 0.2600
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand 3RT, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA Novel Triazolopyridine-Based Spleen Tyrosine Kinase Inhibitor That Arrests Joint Inflammation., Ferguson GD, Delgado M, Plantevin-Krenitsky V, Jensen-Pergakes K, Bates RJ, Torres S, Celeridad M, Brown H, Burnett K, Nadolny L, Tehrani L, Packard G, Pagarigan B, Haelewyn J, Nguyen T, Xu L, Tang Y, Hickman M, Baculi F, Pierce S, Miyazawa K, Jackson P, Chamberlain P, LeBrun L, Xie W, Bennett B, Blease K, PLoS One. 2016 Jan 12;11(1):e0145705. doi: 10.1371/journal.pone.0145705., eCollection 2016. PMID:26756335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (4wnm.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 4WNM
  • CSU: Contacts of Structural Units for 4WNM
  • Structure Factors (194 Kb)
  • Retrieve 4WNM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WNM from S2C, [Save to disk]
  • Re-refined 4wnm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WNM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WNM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wnm] [4wnm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WNM: [TyrKc ] by SMART
  • Other resources with information on 4WNM
  • Community annotation for 4WNM at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science