4WYF Crystal structure of 7,8-diaminopelargonic acid synthase (BioA) from Mycobacterium tuberculosis, complexed with a DSF fragment hit date
authors Barry, C.F., Dai, R.
compound source
symmetry
R_factor
R_Free 0.2357
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.25
ligand 3VX, PLP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFragment-Based Exploration of Binding Site Flexibility in Mycobacterium tuberculosis BioA., Dai R, Geders TW, Liu F, Park SW, Schnappinger D, Aldrich CC, Finzel BC, J Med Chem. 2015 Jun 24. PMID:26068403
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (4wyf.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 4WYF
  • CSU: Contacts of Structural Units for 4WYF
  • Structure Factors (1638 Kb)
  • Retrieve 4WYF in mmCIF format [Save to disk]
  • Re-refined 4wyf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WYF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WYF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wyf_A] [4wyf] [4wyf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4WYF
  • Community annotation for 4WYF at PDBWiki (http://pdbwiki.org)

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