4WYV Crystal Structure of Human Translin in Open Conformation date
authors Dvir, H., Eliahoo, E., Alian, A.
compound source
symmetry
R_factor
R_Free 0.27212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
note 4WYV supersedes 4JHF
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G
  • nuclease activity
  • endonuclease activity
  • endoribonuclease activity


    • Primary referenceA Novel Open-Barrel Structure of Octameric Translin Reveals a Potential RNA Entryway., Eliahoo E, Marx A, Manor H, Alian A, J Mol Biol. 2014 Nov 26. pii: S0022-2836(14)00609-3. doi:, 10.1016/j.jmb.2014.11.013. PMID:25433126
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (581 Kb) [Save to disk]
  • Biological Unit Coordinates (4wyv.pdb1.gz) 574 Kb
  • CSU: Contacts of Structural Units for 4WYV
  • Structure Factors (832 Kb)
  • Retrieve 4WYV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WYV from S2C, [Save to disk]
  • Re-refined 4wyv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WYV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WYV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WYV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wyv_G] [4wyv_A] [4wyv] [4wyv_F] [4wyv_D] [4wyv_E] [4wyv_B] [4wyv_H] [4wyv_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4WYV
  • Community annotation for 4WYV at PDBWiki (http://pdbwiki.org)

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