4X9R PLK-1 polo-box domain in complex with Bioactive Imidazolium-containing phosphopeptide macrocycle 3B date
authors Grant, R.A., Qian, W.J., Yaffe, M.B., Burke, T.R.
compound source
symmetry
R_factor
R_Free 0.1789
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand 4L0, 56A, NH2, TPO enzyme
Primary referenceNeighbor-directed Histidine N(tau)-Alkylation: A Route to Imidazolium-containing Phosphopeptide Macrocycles., Qian WJ, Park JE, Grant R, Lai CC, Kelley JA, Yaffe MB, Lee KS, Burke TR, Biopolymers. 2015 Jul 7. doi: 10.1002/bip.22698. PMID:26152807
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (4x9r.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 4X9R
  • CSU: Contacts of Structural Units for 4X9R
  • Structure Factors (584 Kb)
  • Retrieve 4X9R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X9R from S2C, [Save to disk]
  • Re-refined 4x9r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4X9R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4X9R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x9r_B] [4x9r_A] [4x9r]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4X9R
  • Community annotation for 4X9R at PDBWiki (http://pdbwiki.org)

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