4XTL Crystal structure of the light-driven sodium pump KR2 in the monomeric blue form, pH 4.3 date
authors Gushchin, I., Shevchenko, V., Polovinkin, V., Gordeliy, V.
compound source
symmetry
R_factor
R_Free 0.21626
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.45
ligand GOL, LFA, LYR, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity


    • Primary referenceCrystal structure of a light-driven sodium pump., Gushchin I, Shevchenko V, Polovinkin V, Kovalev K, Alekseev A, Round E, Borshchevskiy V, Balandin T, Popov A, Gensch T, Fahlke C, Bamann C, Willbold D, Buldt G, Bamberg E, Gordeliy V, Nat Struct Mol Biol. 2015 Apr 6. doi: 10.1038/nsmb.3002. PMID:25849142
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (4xtl.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4XTL
  • CSU: Contacts of Structural Units for 4XTL
  • Structure Factors (575 Kb)
  • Retrieve 4XTL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XTL from S2C, [Save to disk]
  • Re-refined 4xtl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XTL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XTL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XTL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xtl_A] [4xtl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4XTL: [Bac_rhodopsin ] by SMART
    • Other resources with information on 4XTL
  • Community annotation for 4XTL at PDBWiki (http://pdbwiki.org)

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