4Y4S Crystal Structure of Y75A HasA dimer from Yersinia pseudotuberculosis date
authors Hino, T., Kanadani, M., Muroki, T., Ishimaru, Y., Wada, Y., Sato, T., Ozaki, S.
compound source
symmetry
R_factor
R_Free 0.2397
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.75
ligand HEM, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of heme acquisition system A from Yersinia pseudotuberculosis (HasA): Roles of the axial ligand Tyr75 and two distal arginines in heme binding., Kanadani M, Sato T, Hino T, Nagano S, Ozaki SI, J Inorg Biochem. 2015 Jul 18. pii: S0162-0134(15)30034-9. doi:, 10.1016/j.jinorgbio.2015.07.007. PMID:26210321
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (4y4s.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 4Y4S
  • CSU: Contacts of Structural Units for 4Y4S
  • Structure Factors (375 Kb)
  • Retrieve 4Y4S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y4S from S2C, [Save to disk]
  • Re-refined 4y4s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y4S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y4S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y4s] [4y4s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Y4S
  • Community annotation for 4Y4S at PDBWiki (http://pdbwiki.org)

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