4Y73 Crystal structure of IRAK4 kinase domain with inhibitor date
authors Lesburg, C.A.
compound source
symmetry
R_factor
R_Free 0.2175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.14
ligand SEP, TPO, XPY enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDiscovery of 5-Amino-N-(1H-pyrazol-4-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide Inhibitors of IRAK4., Lim J, Altman MD, Baker J, Brubaker JD, Chen H, Chen Y, Fischmann T, Gibeau C, Kleinschek MA, Leccese E, Lesburg C, Maclean JK, Moy LY, Mulrooney EF, Presland J, Rakhilina L, Smith GF, Steinhuebel D, Yang R, ACS Med Chem Lett. 2015 Apr 20;6(6):683-8. doi: 10.1021/acsmedchemlett.5b00107., eCollection 2015 Jun 11. PMID:26101574
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (4y73.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (4y73.pdb2.gz) 53 Kb
  • Biological Unit Coordinates (4y73.pdb3.gz) 53 Kb
  • Biological Unit Coordinates (4y73.pdb4.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4Y73
  • CSU: Contacts of Structural Units for 4Y73
  • Structure Factors (1907 Kb)
  • Retrieve 4Y73 in mmCIF format [Save to disk]
  • Re-refined 4y73 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Y73 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Y73
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Y73, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y73_B] [4y73_C] [4y73_A] [4y73] [4y73_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Y73: [STYKc ] by SMART
    • Other resources with information on 4Y73
  • Community annotation for 4Y73 at PDBWiki (http://pdbwiki.org)

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