4Y76 Factor Xa complex with GTC000401 date
authors Convery, M.A., Young, R.J., Senger, S., Hamblin, J.N., Chan, C., Toomey, J.R., Watson, N.S.
compound source
symmetry
R_factor
R_Free 0.2362
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 4O1, CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceFactor Xa inhibitors: S1 binding interactions of a series of N-{(3S)-1-[(1S)-1-methyl-2-morpholin-4-yl-2-oxoethyl]-2-oxopyrrolidin-3-yl }sulfonamides., Chan C, Borthwick AD, Brown D, Burns-Kurtis CL, Campbell M, Chaudry L, Chung CW, Convery MA, Hamblin JN, Johnstone L, Kelly HA, Kleanthous S, Patikis A, Patel C, Pateman AJ, Senger S, Shah GP, Toomey JR, Watson NS, Weston HE, Whitworth C, Young RJ, Zhou P, J Med Chem. 2007 Apr 5;50(7):1546-57. Epub 2007 Mar 6. PMID:17338508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (4y76.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4Y76
  • CSU: Contacts of Structural Units for 4Y76
  • Structure Factors (562 Kb)
  • Retrieve 4Y76 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y76 from S2C, [Save to disk]
  • Re-refined 4y76 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Y76 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Y76
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y76_B] [4y76_A] [4y76]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Y76: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART
    • Other resources with information on 4Y76
  • Community annotation for 4Y76 at PDBWiki (http://pdbwiki.org)

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