4YHT bRaf complexed with an inhibitor date
authors Shewchuk, L.M., Lawhorn, B.G.
compound source
symmetry
R_factor
R_Free 0.2329
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.05
ligand 4EF, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceGSK114: A selective inhibitor for elucidating the biological role of TNNI3K., Lawhorn BG, Philp J, Graves AP, Shewchuk L, Holt DA, Gatto GJ Jr, Kallander LS, Bioorg Med Chem Lett. 2016 Jul 15;26(14):3355-8. doi: 10.1016/j.bmcl.2016.05.033., Epub 2016 May 14. PMID:27246618
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (4yht.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (4yht.pdb2.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 4YHT
  • CSU: Contacts of Structural Units for 4YHT
  • Structure Factors (297 Kb)
  • Retrieve 4YHT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YHT from S2C, [Save to disk]
  • Re-refined 4yht structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YHT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YHT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yht_A] [4yht] [4yht_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YHT: [STYKc ] by SMART
    • Other resources with information on 4YHT
  • Community annotation for 4YHT at PDBWiki (http://pdbwiki.org)

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